Coverage for /opt/conda/envs/apienv/lib/python3.10/site-packages/daiquiri/cli/hdf5_to_json.py: 0%

1#!/usr/bin/env python 

2# -*- coding: utf-8 -*- 

3 

4import sys 

5import json 

6import argparse 

7from daiquiri.core.components.hdf5 import hdf5_to_dict 

8 

9 

10def file_and_path(string): 

11 """Expect a filename string as provided by `silx.io`: `filename.h5::path`""" 

12 if "::" in string: 

13 return string.split("::", 1) 

14 return string, None 

15 

16 

17def main(): 

18 parser = argparse.ArgumentParser() 

19 parser = argparse.ArgumentParser( 

20 description="HDF5 to JSON as provided by the hdf5 component server" 

21 ) 

22 parser.add_argument( 

23 "input", 

24 type=file_and_path, 

25 default=None, 

26 help="Link to the HDF5 file and data path. filename.h5::path", 

27 ) 

28 parser.add_argument( 

29 "--load_data", 

30 action="store_true", 

31 default=False, 

32 help="If defined, the data of the datasets will be included. Else it is set to None", 

33 ) 

34 

35 options = parser.parse_args() 

36 filename, path = options.input 

37 result = hdf5_to_dict(filename, path, load_data=options.load_data) 

38 print(json.dumps(result)) 

39 

40 return 0 

41 

42 

43if __name__ == "__main__": 

44 result = main() 

45 sys.exit(result)